(datalad-conda-forge) login2.stampede2(682)$ cd containers/images/bids/ Install(ok): /scratch/03372/yoh/containers (dataset) (datalad-conda-forge) login2.stampede2(681)$ datalad clone ///repronim/containers
(datalad-conda-forge) login2.stampede2(680)$ pwd (base) login2.stampede2(679)$ conda activate datalad-conda-forge version: Add docker images #1 SMP Wed Oct 13 17:20:.load_error: ModuleNotFoundError(No module named 'libxmp').load_error: ModuleNotFoundError(No module named 'PIL').frictionless_datapackage (datalad 0.15.2):.load_error: ModuleNotFoundError(No module named 'exifread').
| Canceling not-yet running jobs and waiting for completion of running. Git-annex: failed to read sha from git write-treeĮrror, called at. Received an exception CommandError(CommandError: 'git -c diff.ignoreSubmodules=none annex add -json -json-error-messages -c annex.dotfiles=true - images/bids/bids-mriqc-21.0.0rc2.sing' failed with exitcode 1 under /scratch1/03201/jbwexler/openneuro_derivatives/containers [err: 'error: invalid object 100644 4e82683af4cb5cf7bd77d3cd9c35ca453d41fc7d for '415/c16/MD5E-s181080095-f66b6967abee5173c47cac03fd0697d6.6.sing.log'įatal: git-write-tree: error building trees So I copied the image bids-mriqc-21.0.0rc2.sing to containers/images/bids and tried to datalad save. So here's an issue I've had in the past with this dataset (perhaps just due to my bad understanding of datalad): I wanted to add an image of a pre-release of mriqc to my clone of this dataset for testing purposes. "need more data" - what remotes you have available in that clone? how you ended up without having one - may be it got marked as ignore for git-annex? (check within. Get(error): images/bids/bids-fmriprep-20.2.6.sing (file) (main) ontera(1116)$ datalad get bids-fmriprep-20.2.6.sing
For example, I recently updated the dataset (datalad update -merge) and tried to get the newest fmriprep image, but ran into the following error: However, things periodically break and I have to delete the entire dataset and reinstall. So it is that which points to is where it gets those annexed files. Git-annex pushes to git-annex (fast-forwardable) Push URL: :/srv//www/repronim/containers/.git Remote origin not usable by git-annex setting annex-ignore